Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs28538438 chr7:76132397 A/G 2.94E-5 117 39.5 46.23 28.43 KM Plot
THYM rs28562731 chr7:29704643 A/G 5.23E-13 118 37.63 46.27 6 KM Plot
THYM rs28567659 chr9:97118064 G/A 8.53E-5 118 41.77 42.73 17.03 KM Plot
THYM rs28571083 chr4:9660883 A/G 9.25E-9 117 40.67 42.9 12.63 KM Plot
THYM rs28573839 chr7:29687431 G/A 4.22E-13 119 38.23 46.07 6 KM Plot
THYM rs28575335 chr9:97249727 T/C 7.08E-5 119 39.75 45.87 17.03 KM Plot
THYM rs2857590 chr12:121606059 C/A 1.87E-5 118 46.6 46.27 24.87 KM Plot
THYM rs2857591 chr12:121607340 C/T 1.87E-5 118 46.6 46.27 24.87 KM Plot
THYM rs2857592 chr12:121607344 A/G 1.87E-5 118 46.6 46.27 24.87 KM Plot
THYM rs28591682 chr7:29690811 T/C 5.49E-13 118 38.23 46.27 6 KM Plot
THYM rs28602670 chr15:78768167 C/G 3.52E-5 118 42.82 46.6 26 KM Plot
THYM rs2862834 chr10:90741374 A/G 1.47E-12 115 6 49.87 38.58 KM Plot
THYM rs28649760 chr11:133255075 G/A 2.1E-10 115 40.3 52.12 20.9 KM Plot
THYM rs28655068 chr7:29687474 C/T 5.34E-13 118 38.58 45.87 6 KM Plot
THYM rs28664977 chr7:29685369 C/T 5.34E-13 118 38.58 45.87 6 KM Plot